STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3260PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA. (76 aa)    
Predicted Functional Partners:
RPE_3259
PFAM: MobA/MobL protein; KEGG: rpd:RPD_2276 MobA/MobL protein.
 
     0.870
RPE_1026
PFAM: MobA/MobL protein; KEGG: rpd:RPD_2276 MobA/MobL protein.
 
     0.754
RPE_3261
PFAM: phage integrase family protein; KEGG: dar:Daro_2336 phage integrase; Belongs to the 'phage' integrase family.
 
  
 0.605
RPE_2354
KEGG: rpc:RPC_3111 hypothetical protein.
   
    0.440
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.