STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (827 aa)    
Predicted Functional Partners:
RPE_3293
PFAM: permease YjgP/YjgQ family protein; KEGG: rpc:RPC_2312 permease YjgP/YjgQ.
 
  
 0.963
RPE_3292
PFAM: permease YjgP/YjgQ family protein; KEGG: rpc:RPC_2313 permease YjgP/YjgQ.
 
  
 0.962
RPE_0428
PFAM: OstA family protein; KEGG: rpc:RPC_0417 OstA-like protein.
 
 
 0.949
RPE_3295
KEGG: rpc:RPC_2310 hypothetical protein.
 
  
 0.887
RPE_0427
KEGG: rpc:RPC_0418 hypothetical protein.
 
   
 0.810
RPE_2592
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2468 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
  
 0.779
RPE_0397
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.769
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.742
RPE_4830
PFAM: protein of unknown function DUF218; KEGG: rpc:RPC_4865 protein of unknown function DUF218.
  
    0.742
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.728
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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