STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3300KEGG: rpa:RPA1461 hypothetical protein. (338 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.639
RPE_3302
TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rpc:RPC_2304 conserved hypothetical protein 255.
       0.639
RPE_1369
PFAM: CsbD family protein; KEGG: rpc:RPC_1353 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
     0.620
RPE_0236
TIGRFAM: esterase, PHB depolymerase family; KEGG: rpc:RPC_0371 esterase, PHB depolymerase.
   
 
 0.618
RPE_1945
PFAM: protein of unknown function DUF1109; KEGG: sme:SMb20532 hypothetical protein.
  
     0.556
RPE_1523
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.461
RPE_4266
KEGG: rpc:RPC_4227 hypothetical protein.
  
     0.455
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.447
RPE_1573
KEGG: rpb:RPB_3761 hypothetical protein.
 
   
 0.422
RPE_0558
PFAM: phage integrase family protein; KEGG: ret:RHE_CH00241 putative recombinase protein, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.409
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.