STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3328KEGG: rpa:RPA2374 hypothetical protein. (129 aa)    
Predicted Functional Partners:
RPE_3326
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpa:RPA2371 putative RND multidrug efflux membrane fusion protein MexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.904
RPE_3327
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA2372 RND multidrug efflux transporter MexB.
 
 
 0.874
RPE_3954
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1469 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.830
RPE_0189
PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: rpc:RPC_0487 secretion protein HlyD.
  
 
 0.785
RPE_2092
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2180 secretion protein HlyD.
  
 
 0.785
RPE_1010
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1563 type I secretion membrane fusion protein, HlyD.
  
 
 0.654
RPE_1086
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bja:bll6292 probable Hemolysin secretion protein D.
  
 
 0.654
RPE_3512
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_3025 type I secretion membrane fusion protein, HlyD.
  
 
 0.654
RPE_0728
Porin; PFAM: porin; KEGG: rpc:RPC_0748 putative outer membrane protein.
  
  
 0.653
RPE_0832
KEGG: rpc:RPC_2959 putative outer membrane protein precursor.
  
   
 0.633
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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