STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3341PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_2281 short-chain dehydrogenase/reductase SDR. (246 aa)    
Predicted Functional Partners:
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.862
RPE_0893
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_4695 short-chain dehydrogenase/reductase SDR.
  
     0.682
RPE_0118
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KEGG: rpc:RPC_0553 short-chain dehydrogenase/reductase SDR.
  
     0.646
RPE_3674
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: bja:blr7343 probable short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.607
RPE_3339
PFAM: Colicin V production protein; KEGG: rpc:RPC_2283 colicin V production protein.
 
     0.601
RPE_2877
PFAM: sulfatase; KEGG: rpc:RPC_2738 sulfatase.
   
 
 0.580
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.556
RPE_4235
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5976 putative oxidoreductase.
  
     0.530
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
 
 0.519
RPE_0054
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0055 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.516
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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