STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3347KEGG: rpc:RPC_2277 hypothetical protein. (217 aa)    
Predicted Functional Partners:
RPE_2692
PFAM: Sporulation domain protein; KEGG: rpc:RPC_2509 sporulation related.
 
     0.666
RPE_4830
PFAM: protein of unknown function DUF218; KEGG: rpc:RPC_4865 protein of unknown function DUF218.
  
     0.660
RPE_3346
KEGG: rpc:RPC_2278 hypothetical protein.
  
    0.650
RPE_3390
KEGG: rpc:RPC_3312 hypothetical protein.
  
     0.648
RPE_2100
KEGG: rpc:RPC_2187 hypothetical protein.
  
     0.642
RPE_1868
PFAM: ROSMUCR transcriptional regulator; KEGG: rpc:RPC_1774 transcriptional regulator, MucR family.
  
     0.621
RPE_2822
PFAM: SmpA/OmlA domain protein; KEGG: rpc:RPC_2672 SmpA/OmlA.
  
   
 0.616
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.595
RPE_4731
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.594
RPE_0461
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: rpc:RPC_0386 hypothetical protein.
  
     0.562
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.