STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3364KEGG: rpc:RPC_2258 hypothetical protein. (74 aa)    
Predicted Functional Partners:
RPE_1808
KEGG: rpc:RPC_1714 putative RND superfamily transporter.
  
     0.638
RPE_3363
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase.
       0.592
RPE_3806
KEGG: rpb:RPB_3581 TrapT family, DctQ subunit, C4-dicarboxylate transport.
  
     0.572
RPE_2993
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_2874 radical SAM.
  
     0.561
RPE_3974
KEGG: rpd:RPD_2387 hypothetical protein.
  
     0.541
RPE_3365
PFAM: cyclase family protein; KEGG: rpd:RPD_3020 putative cyclase.
 
     0.534
RPE_4491
KEGG: rpb:RPB_4355 hypothetical protein.
  
     0.525
RPE_4773
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_4810 radical SAM.
  
     0.512
RPE_2198
PFAM: sulfatase; KEGG: rpc:RPC_3246 sulfatase.
  
     0.509
RPE_2634
KEGG: rpc:RPC_2889 hypothetical protein.
  
     0.509
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.