STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3377TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rpc:RPC_2244 DNA processing protein DprA, putative. (372 aa)    
Predicted Functional Partners:
RPE_0152
PFAM: phosphoribosyltransferase; KEGG: rpd:RPD_0107 phosphoribosyltransferase.
 
 
 0.932
RPE_2570
PFAM: ComEC/Rec2-related protein; KEGG: rpc:RPC_2453 ComEC/Rec2-related protein.
 
  
 0.892
RPE_2668
KEGG: bja:blr6023 general secretion pathway protein O.
  
  
 0.863
RPE_0360
Mg chelatase, subunit ChlI; KEGG: rpc:RPC_0317 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
 0.852
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 0.755
RPE_2663
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.
 
  
 0.747
RPE_1202
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb2659 serine phosphatase RsbU.
  
    0.743
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.741
RPE_3007
PFAM: regulatory protein, MarR; KEGG: rpb:RPB_2626 transcriptional regulator, MarR family.
  
    0.725
RPE_0103
PFAM: DNA repair protein RadC; KEGG: rpc:RPC_0575 DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.724
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.