STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3392PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rpc:RPC_3314 glycerophosphoryl diester phosphodiesterase. (251 aa)    
Predicted Functional Partners:
RPE_3391
PFAM: Endoribonuclease L-PSP; KEGG: nha:Nham_2448 endoribonuclease L-PSP.
       0.875
RPE_1378
PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1361 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 0.800
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.758
RPE_3390
KEGG: rpc:RPC_3312 hypothetical protein.
 
     0.628
RPE_3393
PFAM: protein of unknown function DUF482; KEGG: rpc:RPC_3315 protein of unknown function DUF482.
       0.604
RPE_4889
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0778 phosphate transport system permease protein 2.
  
  
 0.517
RPE_3394
PFAM: histidine triad (HIT) protein; KEGG: rpc:RPC_3316 histidine triad (HIT) protein.
       0.503
RPE_1869
KEGG: rpc:RPC_1776 hypothetical protein.
  
     0.489
RPE_0033
PFAM: Alkaline phosphatase; KEGG: rpc:RPC_0030 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.468
RPE_1409
PFAM: ribonuclease T2; KEGG: rpc:RPC_1400 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.454
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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