STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3397PFAM: AzlC family protein; KEGG: rpc:RPC_3319 AzlC-like. (245 aa)    
Predicted Functional Partners:
RPE_3396
PFAM: branched-chain amino acid transport; KEGG: rpc:RPC_3318 hypothetical protein.
 
     0.970
RPE_1871
KEGG: rpc:RPC_1778 hypothetical protein.
  
     0.756
RPE_4782
KEGG: rpc:RPC_4819 hypothetical protein.
  
     0.740
RPE_1996
KEGG: rpc:RPC_2084 hypothetical protein.
  
     0.721
RPE_4061
Phasin; TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2.
  
     0.717
RPE_2600
KEGG: rpc:RPC_2476 hypothetical protein.
  
     0.696
RPE_2141
PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA.
  
     0.694
RPE_3395
PFAM: protein of unknown function UPF0066; KEGG: rpd:RPD_3047 protein of unknown function UPF0066.
 
     0.672
RPE_1755
KEGG: rpc:RPC_4024 hypothetical protein.
  
     0.667
RPE_4708
Putative TolA; KEGG: rpc:RPC_4752 putative TolA.
  
     0.658
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.