STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3410TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: atc:AGR_pTi_bx97 hypothetical protein. (198 aa)    
Predicted Functional Partners:
RPE_3411
Transcriptional regulator, XRE family; TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_pTi_183 DNA-binding protein.
 
     0.953
RPE_3409
KEGG: rpd:RPD_3060 hypothetical protein.
       0.563
RPE_3412
KEGG: bja:bll5161 hypothetical protein.
       0.508
RPE_4552
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.485
RPE_3408
PFAM: heat shock protein DnaJ domain protein; KEGG: rpc:RPC_3329 heat shock protein DnaJ-like.
  
    0.470
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.