STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3418KEGG: rpd:RPD_3071 hypothetical protein. (93 aa)    
Predicted Functional Partners:
RPE_2054
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region.
  
     0.731
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.620
RPE_3417
PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpc:RPC_3336 glutathione S-transferase-like.
       0.619
RPE_0234
PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_0372 hypothetical protein.
  
     0.535
RPE_4893
KEGG: rpc:RPC_4925 hypothetical protein.
  
     0.510
RPE_4341
PFAM: Chorismate mutase; KEGG: rpb:RPB_4253 chorismate mutase.
  
     0.497
RPE_1490
KEGG: rpc:RPC_1469 hypothetical protein.
  
     0.480
RPE_3382
PFAM: NUDIX hydrolase; KEGG: rpa:RPA3127 NUDIX hydrolase.
  
     0.440
RPE_1416
KEGG: rpc:RPC_1393 hypothetical protein.
  
     0.432
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.432
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.