STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3422Magnesium transporter; Acts as a magnesium transporter. (473 aa)    
Predicted Functional Partners:
RPE_3421
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family.
       0.680
RPE_3420
PFAM: aldo/keto reductase; KEGG: rpc:RPC_3339 2,5-didehydrogluconate reductase.
       0.590
RPE_3419
PFAM: protein of unknown function DUF218; KEGG: rpc:RPC_3338 protein of unknown function DUF218.
  
    0.537
RPE_3423
PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_3341 polysaccharide deacetylase.
       0.537
RPE_2330
PFAM: Rhomboid family protein; KEGG: rpc:RPC_3129 rhomboid-like protein.
 
 
 
 0.464
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.463
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
 0.450
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
   
 0.421
RPE_0432
TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rpc:RPC_0413 PTS IIA-like nitrogen-regulatory protein PtsN.
 
   
 0.418
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
   
 
 0.405
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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