STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3424PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_3342 polysaccharide deacetylase. (432 aa)    
Predicted Functional Partners:
RPE_2780
PFAM: glycosyl transferase, family 2; KEGG: rpc:RPC_2600 glycosyl transferase, family 2.
 
  
 0.629
RPE_3423
PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_3341 polysaccharide deacetylase.
 
    
0.565
RPE_0738
PFAM: glycosyl transferase, family 2; KEGG: rpb:RPB_0886 glycosyl transferases.
  
  
 0.551
RPE_1097
PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3140 glycosyl transferase, group 2 family protein.
  
  
 0.551
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.453
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
  
 0.429
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.