STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3441KEGG: rpc:RPC_3355 hypothetical protein. (133 aa)    
Predicted Functional Partners:
RPE_0659
PFAM: protein of unknown function DUF1295; KEGG: rpd:RPD_4336 protein of unknown function DUF1295.
 
    0.736
RPE_3442
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rpc:RPC_3356 deoxyribodipyrimidine photolyase.
 
     0.688
RPE_3532
PFAM: protein of unknown function DUF1295; KEGG: rpd:RPD_3119 protein of unknown function DUF1295.
 
    0.618
RPE_2737
PFAM: amine oxidase; KEGG: rpb:RPB_2904 amine oxidase.
 
     0.564
RPE_2736
PFAM: protein of unknown function DUF1365; KEGG: rpc:RPC_2555 protein of unknown function DUF1365.
 
     0.554
RPE_2242
KEGG: rpc:RPC_3217 hypothetical protein.
  
     0.440
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.