STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3493KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein. (388 aa)    
Predicted Functional Partners:
RPE_4896
PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_4928 polysaccharide deacetylase.
 
     0.680
RPE_2847
PFAM: polysaccharide deacetylase; KEGG: rpd:RPD_2699 polysaccharide deacetylase.
 
     0.662
RPE_4510
KEGG: rpc:RPC_4438 hypothetical protein.
 
   
 0.601
RPE_0809
PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein.
 
     0.563
RPE_3749
PFAM: peptidase A24A, prepilin type IV; KEGG: rpc:RPC_3711 peptidase A24A, prepilin type IV.
  
     0.514
RPE_3492
PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpc:RPC_4239 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.
 
     0.481
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
   
 0.441
RPE_4819
PFAM: acyltransferase 3; KEGG: rpc:RPC_4855 acyltransferase 3.
  
     0.433
RPE_2466
KEGG: rme:Rmet_2340 hypothetical protein.
  
     0.428
RPE_3745
KEGG: rpc:RPC_3706 TadE-like.
  
     0.410
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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