STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3508PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rru:Rru_A1486 UDP-glucose 4-epimerase. (317 aa)    
Predicted Functional Partners:
RPE_0687
UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bja:blr1499 UTP--glucose-1-phosphate uridylyltransferase.
 
  
 0.939
RPE_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase.
 
0.895
RPE_3509
PFAM: glycosyl transferase, group 1; KEGG: hma:rrnAC1017 LPS glycosyltransferase.
 
   
 0.855
RPE_3505
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase.
  
 
 0.806
RPE_3510
PFAM: glycosyl transferase, family 2; KEGG: ade:Adeh_3050 glycosyl transferase, family 2.
     
 0.788
RPE_3507
PFAM: GCN5-related N-acetyltransferase.
       0.773
RPE_3506
PFAM: GCN5-related N-acetyltransferase.
       0.689
RPE_1120
PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase.
  
 
 0.681
RPE_1513
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbu:CBU_0680 UDP-glucose/GDP-mannose dehydrogenase family protein.
  
 
 0.681
RPE_4206
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase.
  
 
 0.681
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.