STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3526PFAM: NUDIX hydrolase; KEGG: rpd:RPD_3111 NUDIX hydrolase. (266 aa)    
Predicted Functional Partners:
RPE_4355
PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4296 beta-lactamase-like.
 
     0.835
RPE_3382
PFAM: NUDIX hydrolase; KEGG: rpa:RPA3127 NUDIX hydrolase.
 
     0.703
RPE_0758
KEGG: rpc:RPC_0712 hypothetical protein.
  
     0.685
RPE_3525
PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone.
 
   
 0.637
RPE_0416
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1973 epoxide hydrolase.
 
   0.621
RPE_1701
KEGG: rpd:RPD_1858 putative acetyl-CoA acetyltransferase.
  
    0.597
RPE_0119
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_0270 acyl-CoA dehydrogenase-like.
 
   0.591
RPE_3527
PFAM: dihydrodipicolinate synthetase; KEGG: rpc:RPC_3385 dihydrodipicolinate synthetase; Belongs to the DapA family.
       0.590
RPE_3528
PFAM: MaoC domain protein dehydratase; KEGG: rpb:RPB_2352 MaoC-like dehydratase.
 
    0.587
RPE_4309
PFAM: cytochrome P450; KEGG: rpa:RPA1613 putative cytochrome P-450.
  
   
 0.576
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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