STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3528PFAM: MaoC domain protein dehydratase; KEGG: rpb:RPB_2352 MaoC-like dehydratase. (286 aa)    
Predicted Functional Partners:
RPE_1793
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpd:RPD_1878 short-chain dehydrogenase/reductase SDR.
  0.978
RPE_2390
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3088 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  0.962
RPE_0611
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_1032 short-chain dehydrogenase/reductase SDR.
  0.928
RPE_1773
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4002 3-hydroxybutyrate dehydrogenase.
 
  0.917
RPE_3306
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.917
RPE_3690
PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_3650 short-chain dehydrogenase/reductase SDR.
 
  0.917
RPE_4716
PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_4158 short-chain dehydrogenase/reductase SDR.
 
  0.915
RPE_0167
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase.
 
  0.900
RPE_1794
KEGG: rpa:RPA1776 possible lipid transfer protein.
 
 
 0.845
RPE_1795
PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein.
 
   0.826
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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