STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3535PFAM: DNA/RNA non-specific endonuclease; Peptidase S7, flavivirus helicase (NS3); KEGG: mac:MA3330 hypothetical protein. (713 aa)    
Predicted Functional Partners:
RPE_0722
PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_0754 beta-lactamase-like.
   
   0.871
RPE_3861
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA0135 possible oxidoreductase.
  
    0.718
RPE_1714
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4067 NADH dehydrogenase (quinone).
   
    0.682
RPE_2527
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.682
RPE_4648
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4646 NADH dehydrogenase (quinone).
   
    0.682
RPE_2051
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_1928 phosphonate-binding periplasmic protein.
  
    0.621
RPE_3114
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_4085 phosphonate-binding periplasmic protein.
  
    0.621
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.557
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.522
RPE_0652
PFAM: protein of unknown function DUF805; KEGG: rpc:RPC_0810 protein of unknown function DUF805.
   
  
 0.511
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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