STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3537Hypothetical protein; KEGG: cvi:CV2871 probable hemagglutinin. (76 aa)    
Predicted Functional Partners:
RPE_3538
Hypothetical protein.
       0.776
RPE_1948
PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.
   
    0.562
RPE_1949
KEGG: bps:BPSL1690 hypothetical protein.
   
    0.562
RPE_2585
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_2461 ATPase, E1-E2 type.
   
  
 0.541
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
  
 0.514
RPE_2951
KEGG: nha:Nham_2318 hypothetical protein.
   
  
 0.500
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
  
 0.491
RPE_3539
Hypothetical protein.
  
  
 0.473
RPE_3536
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rru:Rru_A2643 glycerophosphoryl diester phosphodiesterase.
       0.463
RPE_1474
KEGG: rpc:RPC_1455 hypothetical protein.
  
 
 0.449
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.