STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3552KEGG: rpc:RPC_3407 hypothetical protein. (212 aa)    
Predicted Functional Partners:
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.769
RPE_0411
PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.
  
     0.749
RPE_3553
PFAM: protein of unknown function UPF0047; KEGG: rpa:RPA3218 hypothetical protein.
       0.749
RPE_2625
KEGG: rpb:RPB_2754 neurotransmitter-gated ion-channel ligand-binding.
  
     0.741
RPE_0958
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpd:RPD_3849 outer membrane autotransporter barrel.
  
     0.727
RPE_4499
PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein.
  
     0.716
RPE_3330
KEGG: rpa:RPA2375 hypothetical protein.
  
    0.710
RPE_2626
KEGG: rpd:RPD_2798 hypothetical protein.
  
     0.697
RPE_3002
KEGG: rpb:RPB_3155 hypothetical protein.
  
     0.675
RPE_1523
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.664
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.