STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3554PFAM: Choloylglycine hydrolase; KEGG: rpc:RPC_3412 choloylglycine hydrolase. (360 aa)    
Predicted Functional Partners:
RPE_3553
PFAM: protein of unknown function UPF0047; KEGG: rpa:RPA3218 hypothetical protein.
       0.445
RPE_3555
PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr2988 hypothetical protein.
       0.434
RPE_3552
KEGG: rpc:RPC_3407 hypothetical protein.
       0.430
RPE_2926
KEGG: rpc:RPC_2804 hypothetical protein.
 
    0.423
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.