STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3592KEGG: rpc:RPC_3454 hypothetical protein. (399 aa)    
Predicted Functional Partners:
RPE_2847
PFAM: polysaccharide deacetylase; KEGG: rpd:RPD_2699 polysaccharide deacetylase.
 
     0.662
RPE_4896
PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_4928 polysaccharide deacetylase.
 
     0.658
RPE_0809
PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein.
 
     0.639
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
   
 0.631
RPE_4510
KEGG: rpc:RPC_4438 hypothetical protein.
 
   
 0.631
RPE_3593
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_1535 monooxygenase, FAD-binding.
       0.597
RPE_1859
KEGG: rpc:RPC_1767 hypothetical protein.
  
     0.583
RPE_3752
Caulobacter-type pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rpc:RPC_3714 pilus assembly protein CpaD.
  
     0.562
RPE_2057
KEGG: rpc:RPC_2150 membrane protein-like.
  
     0.556
RPE_4125
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rpc:RPC_4001 polysaccharide biosynthesis protein.
 
    0.545
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.