STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3602KEGG: rpb:RPB_2282 hypothetical protein. (217 aa)    
Predicted Functional Partners:
RPE_3603
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_3464 twin-arginine translocation pathway signal.
 
    0.910
RPE_3604
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_2280 (2Fe-2S)-binding protein.
 
     0.841
RPE_3605
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpb:RPB_2279 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.532
RPE_4880
KEGG: rpc:RPC_4912 putative OpgC protein.
  
     0.433
rplA
LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
       0.405
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
       0.405
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.