STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3603TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_3464 twin-arginine translocation pathway signal. (722 aa)    
Predicted Functional Partners:
RPE_3604
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_2280 (2Fe-2S)-binding protein.
 
 0.993
RPE_3602
KEGG: rpb:RPB_2282 hypothetical protein.
 
    0.910
RPE_3214
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme.
 
 0.903
RPE_4568
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_4528 (2Fe-2S)-binding.
 
 0.855
RPE_0591
4-hydroxybenzoyl-CoA reductase gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_1525 (2Fe-2S)-binding.
 
 0.850
RPE_1655
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1631 (2Fe-2S)-binding.
 
 0.837
RPE_1660
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis; KEGG: rpa:RPA3798 xanthine dehydrogenase accessory factor.
 
  
 0.695
RPE_1659
Predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis; PFAM: protein of unknown function DUF182; KEGG: rpa:RPA3799 DUF182.
 
  
 0.664
RPE_0589
4-hydroxybenzoyl-CoA reductase beta subunit; PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpd:RPD_1523 molybdopterin dehydrogenase, FAD-binding.
  
 
 0.647
RPE_1656
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_1632 molybdopterin dehydrogenase, FAD-binding.
  
 
 0.647
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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