STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3660PFAM: regulatory protein, ArsR; KEGG: rpa:RPA3556 transcriptional regulator, ArsR family, ArsR2. (118 aa)    
Predicted Functional Partners:
RPE_3659
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpd:RPD_3419 low molecular weight phosphotyrosine protein phosphatase.
  
 0.967
RPE_3658
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: rpd:RPD_3418 arsenate reductase.
 
   
 0.934
RPE_3657
PFAM: Bile acid:sodium symporter; KEGG: rpd:RPD_3417 bile acid:sodium symporter.
 
  
 0.892
RPE_3662
PFAM: permease; KEGG: rpb:RPB_1645 permease.
  
  
 0.593
RPE_3661
KEGG: rpb:RPB_1646 thiol-disulfide isomerase and thioredoxins.
     
 0.542
RPE_3663
PFAM: regulatory protein, ArsR; KEGG: rpb:RPB_1644 transcriptional regulator, ArsR family.
       0.491
RPE_3941
KEGG: rpc:RPC_3818 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
  
  
 0.424
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.