STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3671PFAM: iron permease FTR1; KEGG: rpc:RPC_3631 iron permease FTR1. (279 aa)    
Predicted Functional Partners:
RPE_3670
KEGG: rpc:RPC_3630 hypothetical protein.
 
    0.984
RPE_3673
KEGG: rpc:RPC_3633 conserved hypothetical membrane antigen.
 
  
 0.983
RPE_2949
KEGG: bmb:BruAb2_0820 hypothetical membrane antigen.
 
  
 0.971
RPE_3672
KEGG: rpc:RPC_3632 hypothetical protein.
 
   
 0.946
RPE_4633
KEGG: bja:bll5040 putative iron-dependent peroxidase.
  
  
 0.894
RPE_4073
PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.
   
  
 0.884
RPE_4578
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3638 TonB-dependent siderophore receptor.
   
  
 0.741
RPE_3153
PFAM: periplasmic binding protein; KEGG: rpc:RPC_1969 periplasmic binding protein.
   
  
 0.714
RPE_0820
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_0598 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
   
    0.707
RPE_0528
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0086 ABC transporter related.
   
  
 0.670
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.