STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3752Caulobacter-type pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rpc:RPC_3714 pilus assembly protein CpaD. (249 aa)    
Predicted Functional Partners:
RPE_3753
KEGG: rpc:RPC_3715 putative pilus assembly protein CpaE.
 
     0.969
RPE_3751
PFAM: type II and III secretion system protein; transport-associated; KEGG: rpc:RPC_3713 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
   
 0.942
RPE_3756
PFAM: type II secretion system protein; KEGG: rpc:RPC_3718 type II secretion system protein.
 
     0.934
RPE_3755
PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein.
 
     0.933
RPE_3754
PFAM: type II secretion system protein E; KEGG: rpc:RPC_3716 type II secretion system protein E.
 
   
 0.896
RPE_3749
PFAM: peptidase A24A, prepilin type IV; KEGG: rpc:RPC_3711 peptidase A24A, prepilin type IV.
 
     0.885
RPE_4298
KEGG: rpa:RPA4081 possible pilus assembly protein cpaB.
 
     0.825
RPE_3745
KEGG: rpc:RPC_3706 TadE-like.
 
     0.813
RPE_3746
PFAM: TadE family protein; KEGG: rpb:RPB_1789 TadE-like.
 
     0.810
RPE_3748
PFAM: Flp/Fap pilin component; KEGG: rpd:RPD_3517 Flp/Fap pilin component.
 
     0.793
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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