STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3765PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3727 binding-protein-dependent transport systems inner membrane component. (369 aa)    
Predicted Functional Partners:
RPE_3764
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3726 binding-protein-dependent transport systems inner membrane component.
  
 0.992
RPE_3766
PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3728 extracellular solute-binding protein, family 5.
 
  
 0.978
RPE_3767
Extracellular solute-binding protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3729 extracellular solute-binding protein, family 5.
 
  
 0.971
RPE_3761
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: nwi:Nwi_0292 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.967
RPE_2793
PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_2613 extracellular solute-binding protein, family 5.
 
  
 0.854
RPE_3762
KEGG: rpd:RPD_3531 PilT protein-like.
       0.789
RPE_3763
Hypothetical protein.
       0.789
RPE_3760
TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: rpc:RPC_3722 nucleoside diphosphate pyrophosphatase.
       0.787
RPE_3768
PFAM: cytochrome c, class I; KEGG: rpc:RPC_3730 cytochrome c, class I.
       0.481
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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