STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3771PFAM: luciferase family protein; KEGG: rpc:RPC_3733 luciferase-like. (339 aa)    
Predicted Functional Partners:
RPE_2416
PFAM: NADPH-dependent FMN reductase; KEGG: rpb:RPB_2517 NADPH-dependent FMN reductase.
 
 
 0.563
RPE_1376
KEGG: rpc:RPC_1359 hypothetical protein.
  
  
 0.505
RPE_3196
PFAM: flavin reductase domain protein, FMN-binding; KEGG: bja:bll7007 putative oxidoreductase.
  
  
 0.505
RPE_0346
PFAM: NADPH-dependent FMN reductase; KEGG: rpc:RPC_0332 NADPH-dependent FMN reductase.
  
 
 0.492
RPE_2610
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rpc:RPC_2487 NADPH-dependent FMN reductase.
  
 
 0.492
RPE_0547
PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: rpc:RPC_0346 pirin-like; Belongs to the pirin family.
  
  
 0.428
RPE_0711
PFAM: Pirin domain protein domain protein; KEGG: rpd:RPD_4351 pirin-like; Belongs to the pirin family.
  
  
 0.426
RPE_0108
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: rpa:RPA0470 perplasmic binding protein of ABC transporter.
  
  
 0.407
RPE_1214
PFAM: NLPA lipoprotein; KEGG: rpd:RPD_2183 putative taurine transport system protein.
  
  
 0.407
RPE_1265
ABC-type nitrate transport system periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1760 twin-arginine translocation pathway signal.
  
  
 0.407
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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