STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3802PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_1887 AMP-dependent synthetase and ligase. (633 aa)    
Predicted Functional Partners:
RPE_3803
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1886 enoyl-CoA hydratase/isomerase.
 
 
 0.931
RPE_3801
PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1888 thioesterase superfamily.
 
  
 0.824
RPE_3804
KEGG: rpb:RPB_3579 hypothetical protein; Belongs to the UPF0311 family.
 
   
 0.763
RPE_4121
PFAM: amidohydrolase 2; KEGG: rpb:RPB_1417 amidohydrolase 2.
 
  
 0.745
RPE_0585
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_0880 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.707
RPE_3794
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: rpd:RPD_1893 regulatory protein, MarR.
  
     0.683
RPE_3808
KEGG: rpa:RPA1781 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
   
 0.674
RPE_0584
benzoyl-CoA oxygenase, component B; KEGG: rpa:RPA0677 hypothetical protein.
  
     0.620
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.619
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.608
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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