STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3830TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpc:RPC_4652 outer membrane autotransporter barrel. (632 aa)    
Predicted Functional Partners:
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
   
 0.735
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.495
RPE_3332
PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA2988 GCN5-related N-acetyltransferase.
  
     0.483
RPE_2061
KEGG: rpd:RPD_3434 hypothetical protein.
  
     0.441
RPE_3831
PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll7902 hypothetical protein.
       0.440
RPE_2639
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rpb:RPB_3126 filamentous haemagglutinin-like protein.
  
   
 0.414
RPE_1523
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   
 0.413
RPE_3832
PFAM: protein of unknown function DUF1127; KEGG: rpc:RPC_3736 hypothetical protein.
       0.413
RPE_4499
PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein.
  
  
 0.410
RPE_3330
KEGG: rpa:RPA2375 hypothetical protein.
  
     0.408
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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