STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3854ABC-type branched-chain amino acid transport systems periplasmic component; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1944 twin-arginine translocation pathway signal. (450 aa)    
Predicted Functional Partners:
RPE_3852
PFAM: inner-membrane translocator; KEGG: rpd:RPD_3133 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.991
RPE_3853
PFAM: inner-membrane translocator; KEGG: rpd:RPD_3134 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.991
RPE_3851
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3132 ABC transporter related.
 
    0.912
RPE_3850
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3131 ABC transporter related.
 
    0.907
RPE_0595
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1019 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.746
RPE_3208
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3424 ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.746
RPE_3796
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3572 branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.746
RPE_4224
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4170 ABC transporter related.
 
    0.492
RPE_4223
PFAM: inner-membrane translocator; KEGG: rpd:RPD_1578 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.491
RPE_0241
Putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rpa:RPA0561 hypothetical protein.
  
   0.465
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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