STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3941KEGG: rpc:RPC_3818 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein. (928 aa)    
Predicted Functional Partners:
RPE_4607
KEGG: rpc:RPC_4600 late embryogenesis abundant protein.
   
 
 0.816
RPE_3940
PFAM: protein of unknown function DUF156; KEGG: rpc:RPC_3817 protein of unknown function DUF156.
 
  
 0.799
RPE_1974
KEGG: sme:SMa1198 possible copper export protein.
     
 0.708
RPE_2508
Multicopper oxidase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; KEGG: rpc:RPC_2390 twin-arginine translocation pathway signal.
  
  
 0.581
RPE_4071
Nitrite reductase, copper-containing; KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3.
  
  
 0.581
RPE_3671
PFAM: iron permease FTR1; KEGG: rpc:RPC_3631 iron permease FTR1.
  
  
 0.578
RPE_0509
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpc:RPC_0073 cation diffusion facilitator family transporter.
 
  
 0.577
RPE_4073
PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.
  
  
 0.561
RPE_4658
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4657 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.530
RPE_2417
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein.
  
  
 0.512
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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