STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4010KEGG: rpc:RPC_3891 hypothetical protein. (80 aa)    
Predicted Functional Partners:
RPE_4011
PFAM: conjugation TrbI family protein; KEGG: rpc:RPC_3892 conjugation TrbI-like protein.
 
   
 0.954
RPE_4015
PFAM: conjugation TrbI family protein; KEGG: rpc:RPC_3892 conjugation TrbI-like protein.
 
   
 0.894
RPE_4016
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpc:RPC_3893 conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.892
RPE_4018
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: rpc:RPC_3895 TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.892
RPE_4020
KEGG: rpc:RPC_3897 putative conjugal transfer protein TrbJ.
 
     0.892
RPE_4017
PFAM: Conjugal transfer protein; KEGG: rpc:RPC_3894 conjugal transfer protein.
 
     0.891
RPE_4021
SMART: AAA ATPase; KEGG: rpc:RPC_3898 ATPase.
 
     0.888
RPE_4022
PFAM: type IV secretory pathway, VirB3 family protein; KEGG: rpc:RPC_3899 type IV secretory pathway, VirB3-like.
 
     0.882
RPE_4023
PFAM: Conjugal transfer protein TrbC; KEGG: rpc:RPC_3900 conjugal transfer protein TrbC.
 
     0.880
RPE_4025
KEGG: rpc:RPC_3902 hypothetical protein.
 
     0.851
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.