STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4055KEGG: dar:Daro_2234 hypothetical protein. (513 aa)    
Predicted Functional Partners:
RPE_2668
KEGG: bja:blr6023 general secretion pathway protein O.
   
  
 0.734
RPE_0316
KEGG: rpc:RPC_0210 hypothetical protein.
   
  
 0.643
RPE_4056
KEGG: rpd:RPD_2290 ATP-dependent endonuclease of the OLD family-like.
       0.572
RPE_4054
KEGG: rpc:RPC_3049 hypothetical protein.
       0.551
RPE_4053
KEGG: rpc:RPC_3050 hypothetical protein.
       0.546
RPE_4057
KEGG: rpd:RPD_2289 superfamily I DNA and RNA helicases-like.
       0.526
RPE_4058
Hypothetical protein.
       0.526
RPE_3377
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rpc:RPC_2244 DNA processing protein DprA, putative.
  
  
 0.493
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.