STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4072PFAM: protein of unknown function DUF323; KEGG: bja:blr7090 probable periplasmic nitrate reductase. (286 aa)    
Predicted Functional Partners:
RPE_4071
Nitrite reductase, copper-containing; KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3.
 
   
 0.870
RPE_4070
KEGG: rpc:RPC_3946 hypothetical protein.
 
     0.752
RPE_2877
PFAM: sulfatase; KEGG: rpc:RPC_2738 sulfatase.
  
   0.722
RPE_0621
PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.668
RPE_0618
PFAM: von Willebrand factor, type A; KEGG: rpa:RPA1458 dinitrification protein NorD.
 
     0.630
RPE_0620
PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: rpa:RPA1457 regulatory protein NorQ, probable ATPase.
 
   
 0.621
RPE_0622
KEGG: bja:blr3214 nitric oxide reductase subunit C.
 
     0.611
RPE_4073
PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.
 
     0.575
RPE_4068
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_3945 transcriptional regulator, Crp/Fnr family.
 
     0.573
RPE_1618
KEGG: rpc:RPC_1597 hypothetical protein.
  
  
 0.558
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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