STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4074PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3948 binding-protein-dependent transport systems inner membrane component. (571 aa)    
Predicted Functional Partners:
RPE_4073
PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.
 
 
 0.998
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.741
RPE_3153
PFAM: periplasmic binding protein; KEGG: rpc:RPC_1969 periplasmic binding protein.
   
  
 0.572
RPE_3671
PFAM: iron permease FTR1; KEGG: rpc:RPC_3631 iron permease FTR1.
   
  
 0.520
RPE_0528
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0086 ABC transporter related.
   
  
 0.508
RPE_3127
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2923 ABC transporter related.
   
  
 0.508
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
   
  
 0.508
RPE_3488
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2478 ABC transporter related.
   
  
 0.508
RPE_0529
PFAM: periplasmic binding protein; KEGG: rpc:RPC_0087 periplasmic binding protein.
   
  
 0.474
RPE_3126
PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein.
   
  
 0.474
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.