STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4079PFAM: AsmA family protein; KEGG: rpc:RPC_3951 AsmA. (645 aa)    
Predicted Functional Partners:
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
 
   
 0.752
RPE_4823
KEGG: rpc:RPC_4859 hypothetical protein.
  
     0.726
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.712
RPE_0648
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0813 hypothetical protein.
  
     0.708
RPE_1847
KEGG: rpc:RPC_1755 hypothetical protein.
  
     0.685
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
     0.680
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.658
RPE_4080
Hypothetical protein.
       0.655
RPE_0678
Apple domain, N/apple PAN precursor; KEGG: rpc:RPC_0731 apple.
  
     0.650
RPE_4919
KEGG: rpc:RPC_4942 hypothetical protein.
  
     0.646
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.