STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4095PFAM: sodium/calcium exchanger membrane region; KEGG: rpc:RPC_3965 sodium/calcium exchanger membrane region. (349 aa)    
Predicted Functional Partners:
RPE_4094
KEGG: rpc:RPC_3963 hypothetical protein.
       0.519
RPE_0181
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
  
 
 
 0.500
RPE_3639
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative.
  
    0.499
RPE_4852
PFAM: ribonuclease BN; KEGG: rpc:RPC_4883 ribonuclease BN.
  
    0.499
RPE_0515
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpd:RPD_0477 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
    0.478
RPE_4096
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.436
RPE_4097
KEGG: rpc:RPC_3967 NAD(P) transhydrogenase subunit alpha part.
       0.424
RPE_0191
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
    0.422
RPE_3840
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
    0.422
RPE_4098
NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rpc:RPC_3968 NAD(P)(+) transhydrogenase (AB-specific).
       0.418
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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