STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4099PFAM: aa3 type cytochrome c oxidase subunit IV; KEGG: rpc:RPC_3969 aa3 type cytochrome c oxidase subunit IV. (50 aa)    
Predicted Functional Partners:
RPE_4098
NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rpc:RPC_3968 NAD(P)(+) transhydrogenase (AB-specific).
       0.647
RPE_4097
KEGG: rpc:RPC_3967 NAD(P) transhydrogenase subunit alpha part.
       0.631
RPE_4096
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.614
RPE_4100
TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rpb:RPB_1433 death-on-curing protein.
       0.513
RPE_4101
Transcriptional regulator/antitoxin, MazE; TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rpd:RPD_1412 SpoVT/AbrB-like.
       0.489
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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