STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4106PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882. (539 aa)    
Predicted Functional Partners:
RPE_4105
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_3977 peptidoglycan-binding domain 1.
 
   
 0.824
RPE_0233
PFAM: beta-lactamase domain protein; KEGG: rpb:RPB_0715 beta-lactamase-like.
  
    0.765
RPE_0091
Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase.
  
   
 0.685
RPE_4355
PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4296 beta-lactamase-like.
 
    0.556
RPE_2333
KEGG: rpc:RPC_3126 hypothetical protein.
  
     0.547
RPE_4314
PFAM: conserved hypothetical protein 1620; KEGG: rpc:RPC_4271 conserved hypothetical protein 1620.
  
     0.546
RPE_2037
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_2129 ErfK/YbiS/YcfS/YnhG.
 
     0.526
RPE_0139
PFAM: protein of unknown function DUF949; KEGG: rpc:RPC_0527 protein of unknown function DUF949.
  
    0.521
RPE_2308
KEGG: rpc:RPC_3148 hypothetical protein.
  
     0.511
RPE_4350
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_1167 ErfK/YbiS/YcfS/YnhG.
 
     0.501
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.