STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4113PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3987 alpha/beta hydrolase fold. (318 aa)    
Predicted Functional Partners:
RPE_4114
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3988 tetratricopeptide TPR_2.
 
    0.755
RPE_4112
PFAM: OsmC family protein; KEGG: rpc:RPC_3986 OsmC-like protein.
  
  
 0.627
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
  
 
  0.616
RPE_0133
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
  
 
  0.614
RPE_4111
PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_1422 protein of unknown function UPF0150.
       0.529
RPE_0231
PFAM: protein of unknown function DUF1052; KEGG: rpc:RPC_0375 protein of unknown function DUF1052.
  
     0.473
RPE_4426
KEGG: rpc:RPC_4363 glycosyl transferase, family 2.
  
 
 
 0.470
RPE_4302
KEGG: rpc:RPC_4262 hypothetical protein.
  
     0.458
rpmJ
TIGRFAM: ribosomal protein L36; KEGG: rpc:RPC_3989 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
       0.455
RPE_1541
KEGG: rpc:RPC_1510 hypothetical protein.
  
     0.435
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.