STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4118PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3994 MaoC-like dehydratase. (148 aa)    
Predicted Functional Partners:
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
 0.951
RPE_1731
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_4048 poly-beta-hydroxybutyrate polymerase-like.
 
  
 0.931
RPE_1836
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1738 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.930
RPE_2386
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3447 enoyl-CoA hydratase.
  
 0.930
RPE_0167
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase.
 
  0.929
RPE_2940
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.925
RPE_4117
PFAM: Uncharacterized protein UPF0065; KEGG: rpc:RPC_3993 uncharacterized protein UPF0065.
       0.732
RPE_4119
PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3995 hypothetical protein.
 
    
0.720
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.596
RPE_3201
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sme:SMb21530 acetolactate synthase large subunit.
    
 0.590
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: very high (>100%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.