STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4121PFAM: amidohydrolase 2; KEGG: rpb:RPB_1417 amidohydrolase 2. (291 aa)    
Predicted Functional Partners:
RPE_4122
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_3997 YbaK/prolyl-tRNA synthetase associated region.
 
     0.826
RPE_3804
KEGG: rpb:RPB_3579 hypothetical protein; Belongs to the UPF0311 family.
 
  
 0.809
RPE_3802
PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_1887 AMP-dependent synthetase and ligase.
 
  
 0.745
RPE_3808
KEGG: rpa:RPA1781 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
  
 0.735
RPE_3824
PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_3607 AMP-dependent synthetase and ligase.
 
   
 0.727
RPE_4120
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_3996 transcriptional regulator, IclR family.
 
     0.696
RPE_0745
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.638
RPE_3794
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: rpd:RPD_1893 regulatory protein, MarR.
 
   
 0.622
RPE_0747
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.
 
   
 0.541
RPE_4839
PFAM: Carboxymuconolactone decarboxylase; KEGG: rpd:RPD_0939 carboxymuconolactone decarboxylase.
 
     0.495
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.