Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPE_4136Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (94 aa)    
Predicted Functional Partners:
vapC-5
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.952
RPE_4448
KEGG: rpc:RPC_4391 hypothetical protein.
   
 
 0.806
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.769
RPE_3246
PFAM: PilT protein domain protein; KEGG: mlo:mlr5903 plasmid stabilization protein.
 
   
 0.743
RPE_4138
KEGG: rpb:RPB_1318 hypothetical protein.
       0.547
RPE_3421
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family.
  
   
 0.511
RPE_2627
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2499 protein of unknown function DUF433.
 
   
 0.493
RPE_4135
KEGG: rpc:RPC_1806 hypothetical protein.
       0.479
RPE_1144
KEGG: rpc:RPC_3552 hypothetical protein.
  
   
 0.473
RPE_4748
PFAM: protein of unknown function DUF433; KEGG: rpa:RPA0826 DUF433.
 
   
 0.440
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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