STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4145PFAM: Di-haem cytochrome c peroxidase; KEGG: rpc:RPC_1205 cytochrome-c peroxidase. (331 aa)    
Predicted Functional Partners:
RPE_4336
NHL repeat-containing protein; KEGG: rpa:RPA4432 NHL repeat.
  
 
 0.900
RPE_4683
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein.
  
 
 0.900
tolB
Transport system periplasmic component; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.827
RPE_4144
PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1749 NapC/NirT cytochrome c-like; Belongs to the TorC/TorY family.
 
  
 0.643
RPE_3041
PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein.
  
    0.590
RPE_2206
Polyphosphate:AMP phosphotransferase; PFAM: protein of unknown function DUF344; KEGG: rpc:RPC_3238 protein of unknown function DUF344.
  
    0.574
RPE_0017
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II.
   
  
 0.497
RPE_4633
KEGG: bja:bll5040 putative iron-dependent peroxidase.
 
   
 0.488
RPE_4146
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA2957 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL).
       0.458
RPE_3151
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1971 radical SAM.
   
  
 0.450
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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