STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4146Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA2957 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL). (891 aa)    
Predicted Functional Partners:
RPE_1789
KEGG: bja:bll4192 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.
 
  
 0.626
RPE_1483
Periplasmic sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; KEGG: rpc:RPC_1464 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
 
0.602
RPE_0171
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_0502 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
 
0.592
RPE_4915
KEGG: rpc:RPC_4938 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.
 
  
 0.575
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
  
 
 0.514
RPE_2032
Diguanylate cyclase with PAS/PAC sensor; KEGG: rpd:RPD_3460 GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.511
RPE_2358
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpb:RPB_4125 diguanylate cyclase.
 
 
0.490
RPE_1370
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase.
 
 
 0.475
RPE_4465
Response regulator receiver modulated diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rpd:RPD_4230 putative cylclic diguanylate phosphodiesterase.
 
  
0.473
RPE_0688
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_0766 diguanylate cyclase (GGDEF domain).
 
0.472
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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