STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4151PFAM: aldo/keto reductase; KEGG: rpd:RPD_3895 aldo/keto reductase. (273 aa)    
Predicted Functional Partners:
RPE_4181
PFAM: aldo/keto reductase; KEGG: rpc:RPC_4128 aldo/keto reductase.
 
 
0.784
RPE_3773
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.773
RPE_4552
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.720
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.705
RPE_2082
PFAM: aldo/keto reductase; KEGG: rpc:RPC_4894 aldo/keto reductase.
 
 
0.671
RPE_1259
Sulfite reductase (NADPH) alpha subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; KEGG: rpb:RPB_1753 oxidoreductase, FAD/NAD(P)-binding.
   
 0.665
RPE_4112
PFAM: OsmC family protein; KEGG: rpc:RPC_3986 OsmC-like protein.
  
  
 0.591
RPE_4152
TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_4093 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.532
RPE_0114
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 probable oxidoreductase.
   
 
 0.510
RPE_3266
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rpc:RPC_3068 alcohol dehydrogenase, zinc-binding.
   
 
 0.510
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.